Recent Publications

  • Patterns of variation in diversity of the Mississippi river microbiome over 1,300 kilometers

    Details Article Link

  • Spatial heterogeneity can undermine the effectiveness of country-wide test and treat policy for malaria: a case study from Burkina Faso

    Details Article Link Shiny App #1 Shiny App #2

  • Bias in logistic regression due to imperfect diagnostic test results and practical correction approaches

    Details Article Link

  • Particle-associated and cell-free extracellular enzyme activity in relation to nutrient status of large tributaries of the Lower Mississippi River

    Details Article Link

  • Free-living and particle-associated bacterioplankton in large rivers of the Mississippi River Basin demonstrate biogeographic patterns

    Details Article Link

  • Determination of Microbial Extracellular Enzyme Activity in Waters, Soils, and Sediments using High Throughput Microplate Assays

    Details Article Link

Recent Posts

Here are some links for my poster presentation at ASTMH 2017:


Seeing if I can embed this Shiny app using iframe: Seems to have worked! Unfortnately the sidebar and main panels seem to stack regardless of the width, still looking for a solution for this. Maybe there is a way to scale iframes? If you’re interested, here is the code for creating the app: # Shiny app for cost tool graph library(shiny) library(tidyverse) library(plotly) # Define UI for application that draws a histogram ui <- fluidPage( # Application title titlePanel("Comparison of presumptive treatments and test-than-treat across prevalences"), # Sidebar with a slider input for number of bins sidebarLayout( sidebarPanel( sliderInput("sn", "RDT Sensitivity", min = 0, max = 1, step = 0.


Sample R code black:


centre <- function(x, type, ...) {
         mean = mean(x),
         median = median(x),
         trimmed = mean(x, trim = .1))

var <- NULL


Sample code block from testing syntax highlighting:

# hello world

you can write text [with links]( inline or [link references][1].

* one _thing_ has *em*phasis
* two __things__ are **bold**



hello world

<this_is inline="xml"></this_is>

> markdown is so cool

    so are code segments

1. one thing (yeah!)
2. two thing `i can write code`, and `more` wipee!


This is a presentation that I gave at the UF R Meetups focused on getting started in R and RStudio. This was largely adapted R lesson from Data Carpentry.

link to pdf